Class RrbsCpgDetailMetrics

java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.metrics.MultilevelMetrics
picard.analysis.RrbsCpgDetailMetrics

@DocumentedFeature(groupName="Metrics", summary="Metrics") public final class RrbsCpgDetailMetrics extends MultilevelMetrics
Holds information about CpG sites encountered for RRBS processing QC
  • Field Details

    • SEQUENCE_NAME

      public String SEQUENCE_NAME
      Sequence the CpG is seen in
    • POSITION

      public Integer POSITION
      Position within the sequence of the CpG site
    • TOTAL_SITES

      public Integer TOTAL_SITES
      Number of times this CpG site was encountered
    • CONVERTED_SITES

      public Integer CONVERTED_SITES
      Number of times this CpG site was converted (TG for + strand, CA for - strand)
    • PCT_CONVERTED

      public Double PCT_CONVERTED
      CpG CONVERTED_BASES / CpG TOTAL_BASES (fraction)
  • Constructor Details

    • RrbsCpgDetailMetrics

      public RrbsCpgDetailMetrics()