Class IlluminaBPMFile

java.lang.Object
picard.arrays.illumina.InfiniumDataFile
picard.arrays.illumina.IlluminaBPMFile
All Implemented Interfaces:
AutoCloseable

public class IlluminaBPMFile extends InfiniumDataFile implements AutoCloseable
A class to parse the contents of an Illumina Bead Pool Manifest (BPM) file A BPM file contains metadata (including the alleles, mapping and normalization information) on an Illumina Genotyping Array Each type of genotyping array has a specific BPM .
  • Constructor Details

  • Method Details

    • close

      public void close() throws IOException
      Specified by:
      close in interface AutoCloseable
      Throws:
      IOException
    • getManifestName

      public String getManifestName()
    • getControlConfig

      public String getControlConfig()
    • getLocusEntries

      public IlluminaBPMLocusEntry[] getLocusEntries()
    • getAllNormalizationIds

      public int[] getAllNormalizationIds()
    • getUniqueNormalizationIds

      public Integer[] getUniqueNormalizationIds()