Class GeneAnnotationReader

java.lang.Object
picard.annotation.GeneAnnotationReader

public class GeneAnnotationReader extends Object
Load gene annotations into an OverlapDetector of Gene objects. Currently only refFlat format is accepted.
  • Constructor Details

    • GeneAnnotationReader

      public GeneAnnotationReader()
  • Method Details

    • loadRefFlat

      public static htsjdk.samtools.util.OverlapDetector<Gene> loadRefFlat(File refFlatFile, htsjdk.samtools.SAMSequenceDictionary sequenceDictionary)