Class Build37ExtendedIlluminaManifestRecord

java.lang.Object
picard.arrays.illumina.IlluminaManifestRecord
picard.arrays.illumina.Build37ExtendedIlluminaManifestRecord

public class Build37ExtendedIlluminaManifestRecord extends IlluminaManifestRecord
A class to represent a record (line) from an Extended Illumina Manifest [Assay] entry
  • Method Details

    • getAlleleA

      public htsjdk.variant.variantcontext.Allele getAlleleA()
    • getAlleleB

      public htsjdk.variant.variantcontext.Allele getAlleleB()
    • getRefAllele

      public htsjdk.variant.variantcontext.Allele getRefAllele()
    • getReferenceStrand

      public htsjdk.tribble.annotation.Strand getReferenceStrand()
    • getB37Chr

      public String getB37Chr()
    • getB37Pos

      public Integer getB37Pos()
    • getSnpRefAllele

      public String getSnpRefAllele()
    • getSnpAlleleA

      public String getSnpAlleleA()
    • getSnpAlleleB

      public String getSnpAlleleB()
    • getRsId

      public String getRsId()
    • isFail

      public Boolean isFail()
    • isDupe

      public Boolean isDupe()
    • getFlag

    • setRsId

      public void setRsId(String rsId)
    • setDupe

      public void setDupe(boolean isDupe)
    • getLine

      public String getLine()
      Overrides:
      getLine in class IlluminaManifestRecord