Class CrosscheckMetric

java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.fingerprint.CrosscheckMetric
Direct Known Subclasses:
ClusteredCrosscheckMetric

public class CrosscheckMetric extends htsjdk.samtools.metrics.MetricBase
A class to hold the result of crosschecking fingerprints. The same metric will be used for crosschecking Readgroups, libraries, samples, or files.
  • Field Details

    • LEFT_GROUP_VALUE

      public String LEFT_GROUP_VALUE
    • RIGHT_GROUP_VALUE

      public String RIGHT_GROUP_VALUE
    • RESULT

    • DATA_TYPE

      public CrosscheckMetric.DataType DATA_TYPE
    • LOD_SCORE

      public Double LOD_SCORE
    • LOD_SCORE_TUMOR_NORMAL

      public Double LOD_SCORE_TUMOR_NORMAL
    • LOD_SCORE_NORMAL_TUMOR

      public Double LOD_SCORE_NORMAL_TUMOR
    • LEFT_RUN_BARCODE

      public String LEFT_RUN_BARCODE
    • LEFT_LANE

      public Integer LEFT_LANE
    • LEFT_MOLECULAR_BARCODE_SEQUENCE

      public String LEFT_MOLECULAR_BARCODE_SEQUENCE
    • LEFT_LIBRARY

      public String LEFT_LIBRARY
    • LEFT_SAMPLE

      public String LEFT_SAMPLE
    • LEFT_FILE

      public String LEFT_FILE
    • RIGHT_RUN_BARCODE

      public String RIGHT_RUN_BARCODE
    • RIGHT_LANE

      public Integer RIGHT_LANE
    • RIGHT_MOLECULAR_BARCODE_SEQUENCE

      public String RIGHT_MOLECULAR_BARCODE_SEQUENCE
    • RIGHT_LIBRARY

      public String RIGHT_LIBRARY
    • RIGHT_SAMPLE

      public String RIGHT_SAMPLE
    • RIGHT_FILE

      public String RIGHT_FILE
  • Constructor Details

    • CrosscheckMetric

      public CrosscheckMetric()