Package picard.vcf.filter
Class QdFilter
java.lang.Object
picard.vcf.filter.QdFilter
- All Implemented Interfaces:
VariantFilter
Filters out sites that have a QD annotation applied to them and where the QD value is lower than a
lower limit.
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
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Field Details
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FILTER_NAME
- See Also:
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Constructor Details
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QdFilter
public QdFilter(double minimumQd)
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Method Details
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filter
Description copied from interface:VariantFilter
Check to see if the VariantContext should have a filter applied to it. If so return the filter string, otherwise return null.- Specified by:
filter
in interfaceVariantFilter
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headerLines
Description copied from interface:VariantFilter
Return VCF header lines that define filters that may be applied by the VariantFilter.- Specified by:
headerLines
in interfaceVariantFilter
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