Enum Class ReadBaseStratification.PairOrientation

java.lang.Object
java.lang.Enum<ReadBaseStratification.PairOrientation>
picard.sam.SamErrorMetric.ReadBaseStratification.PairOrientation
All Implemented Interfaces:
Serializable, Comparable<ReadBaseStratification.PairOrientation>, Constable
Enclosing class:
ReadBaseStratification

public static enum ReadBaseStratification.PairOrientation extends Enum<ReadBaseStratification.PairOrientation>
An enum for holding a reads read-pair's Orientation (i.e. F1R2, F2R1, or TANDEM) indicating the strand (positive or negative) that each of the two mated reads are aligned to. In connection with READ_BASE and similar stratifiers this can be used to observe oxoG-type sequencing artifacts.

Note that this is not related to FR/RF/TANDEM classification as per PairOrientation.