Package picard.sam
Class SetNmAndUqTags
java.lang.Object
picard.cmdline.CommandLineProgram
picard.sam.SetNmMdAndUqTags
picard.sam.SetNmAndUqTags
Deprecated.
This tool is deprecated and SetNmMdAndUqTags should be used instead.
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Field Summary
Fields inherited from class picard.sam.SetNmMdAndUqTags
INPUT, IS_BISULFITE_SEQUENCE, OUTPUT, SET_ONLY_UQ
Fields inherited from class picard.cmdline.CommandLineProgram
COMPRESSION_LEVEL, CREATE_INDEX, CREATE_MD5_FILE, GA4GH_CLIENT_SECRETS, MAX_ALLOWABLE_ONE_LINE_SUMMARY_LENGTH, MAX_RECORDS_IN_RAM, QUIET, REFERENCE_SEQUENCE, referenceSequence, specialArgumentsCollection, SYNTAX_TRANSITION_URL, TMP_DIR, USE_JDK_DEFLATER, USE_JDK_INFLATER, VALIDATION_STRINGENCY, VERBOSITY
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class picard.sam.SetNmMdAndUqTags
doWork, requiresReference
Methods inherited from class picard.cmdline.CommandLineProgram
checkRInstallation, customCommandLineValidation, getCommandLine, getCommandLineParser, getCommandLineParserForArgs, getDefaultHeaders, getFaqLink, getMetricsFile, getPGRecord, getStandardUsagePreamble, getStandardUsagePreamble, getVersion, hasWebDocumentation, instanceMain, instanceMainWithExit, makeReferenceArgumentCollection, parseArgs, setDefaultHeaders, useLegacyParser
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Constructor Details
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SetNmAndUqTags
public SetNmAndUqTags()Deprecated.
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