Package picard.filter
Class CountingMapQFilter
java.lang.Object
picard.filter.CountingFilter
picard.filter.CountingMapQFilter
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htsjdk.samtools.filter.SamRecordFilter
Counting filter that discards reads below a configurable mapping quality threshold.
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionboolean
reallyFilterOut
(htsjdk.samtools.SAMRecord record) Return true if we are to filter this record out, false otherwise.Methods inherited from class picard.filter.CountingFilter
filterOut, filterOut, getFilteredBases, getFilteredRecords
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Constructor Details
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CountingMapQFilter
public CountingMapQFilter(int minMapq)
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Method Details
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reallyFilterOut
public boolean reallyFilterOut(htsjdk.samtools.SAMRecord record) Description copied from class:CountingFilter
Return true if we are to filter this record out, false otherwise.- Specified by:
reallyFilterOut
in classCountingFilter
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