Package picard.vcf.filter
Class FisherStrandFilter
java.lang.Object
picard.vcf.filter.FisherStrandFilter
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VariantFilter
Filters records based on the phred scaled p-value from the Fisher Strand test stored in
the FS attribute.
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Constructor Summary
Constructors -
Method Summary
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Constructor Details
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FisherStrandFilter
public FisherStrandFilter(double maxPhredScalePValue)
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Method Details
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headerLines
Description copied from interface:VariantFilter
Return VCF header lines that define filters that may be applied by the VariantFilter.- Specified by:
headerLines
in interfaceVariantFilter
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filter
Description copied from interface:VariantFilter
Check to see if the VariantContext should have a filter applied to it. If so return the filter string, otherwise return null.- Specified by:
filter
in interfaceVariantFilter
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